- Modified `.env.example` to set default terminal environment to 'local' and updated Docker, Singularity, and Modal image references to use 'python:3.11-slim'.
- Updated `package.json` to include Node.js engine requirements and modified post-install script for better user guidance.
- Enhanced `pyproject.toml` to reflect new dependencies and optional dependencies for modal and development environments.
- Improved `README.md` with additional setup instructions for Singularity and Node.js dependencies, along with clearer toolset documentation.
- Refactored `model_tools.py` to include new tool definitions and ensure consistency across toolsets.
- Updated architecture documentation to clarify tool structure and registration processes.
