Every working dir hermes ever touches gets its own shadow git repo under
~/.hermes/checkpoints/{sha256(abs_dir)[:16]}/. The per-repo _prune is a
no-op (comment in CheckpointManager._prune says so), so abandoned repos
from deleted/moved projects or one-off tmp dirs pile up forever. Field
reports put the typical offender at 1000+ repos / ~12 GB on active
contributor machines.
Adds an opt-in startup sweep that mirrors the sessions.auto_prune
pattern from #13861 / #16286:
- tools/checkpoint_manager.py: new prune_checkpoints() and
maybe_auto_prune_checkpoints() helpers. Deletes shadow repos that
are orphan (HERMES_WORKDIR marker points to a path that no longer
exists) or stale (newest in-repo mtime older than retention_days).
Idempotent via a CHECKPOINT_BASE/.last_prune marker file so it only
runs once per min_interval_hours regardless of how many hermes
processes start up.
- hermes_cli/config.py: new checkpoints.auto_prune /
retention_days / delete_orphans / min_interval_hours knobs.
Default auto_prune: false so users who rely on /rollback against
long-ago sessions never lose data silently.
- cli.py / gateway/run.py: startup hooks gated on checkpoints.auto_prune,
called right next to the existing state.db maintenance block.
- Docs updated with the new config knobs.
- 11 regression tests: orphan/stale deletion, precedence, byte-freed
tracking, non-shadow dir skip, interval gating, corrupt marker
recovery.
Refs #3015 (session-file disk growth was fixed in #16286; this covers
the checkpoint side noted out-of-scope there).
Major reorganization of the documentation site for better discoverability
and navigation. 94 pages across 8 top-level sections (was 5).
Structural changes:
- Promote Features from 3-level-deep subcategory to top-level section
with new Overview hub page categorizing all 26 feature pages
- Promote Messaging Platforms from User Guide subcategory to top-level
section, add platform comparison matrix (13 platforms x 7 features)
- Create new Integrations section with hub page, grouping MCP, ACP,
API Server, Honcho, Provider Routing, Fallback Providers
- Extract AI provider content (626 lines) from configuration.md into
dedicated integrations/providers.md — configuration.md drops from
1803 to 1178 lines
- Subcategorize Developer Guide into Architecture, Extending, Internals
- Rename "User Guide" to "Using Hermes" for top-level items
Orphan fixes (7 pages now reachable via sidebar):
- build-a-hermes-plugin.md added to Guides
- sms.md added to Messaging Platforms
- context-references.md added to Features > Core
- plugins.md added to Features > Core
- git-worktrees.md added to Using Hermes
- checkpoints-and-rollback.md added to Using Hermes
- checkpoints.md (30-line stub) deleted, superseded by
checkpoints-and-rollback.md (203 lines)
New files:
- integrations/index.md — Integrations hub page
- integrations/providers.md — AI provider setup (extracted)
- user-guide/features/overview.md — Features hub page
Broken link fixes:
- quickstart.md, faq.md: update context-length-detection anchors
- configuration.md: update checkpoints link
- overview.md: fix checkpoint link path
Docusaurus build verified clean (zero broken links/anchors).
- Reflect that checkpoints are now enabled by default
- Document /rollback diff <N> for previewing changes
- Document /rollback <N> <file> for single-file restore
- Document automatic conversation undo on rollback
- Document terminal command checkpoint coverage
- Update listing example to show change stats
- Fix config path (checkpoints.enabled, not agent.checkpoints_enabled)
- Consolidate features/checkpoints.md to brief summary with link
