docs: document SOUL.md as primary agent identity

Update all SOUL.md documentation to reflect that it now occupies
slot #1 in the system prompt, replacing the hardcoded default identity.

Updated pages:
- user-guide/features/personality.md — SOUL.md is primary identity, not just a layer
- developer-guide/prompt-assembly.md — updated prompt layer order, context files list
- guides/use-soul-with-hermes.md — SOUL.md replaces built-in identity
- user-guide/configuration.md — updated context files table and directory tree

website/docs/developer-guide/prompt-assembly.md

@@ -28,17 +28,19 @@ Primary files:
 
 The cached system prompt is assembled in roughly this order:
 
-1. default agent identity
+1. agent identity — `SOUL.md` from `HERMES_HOME` when available, otherwise falls back to `DEFAULT_AGENT_IDENTITY` in `prompt_builder.py`
 2. tool-aware behavior guidance
 3. Honcho static block (when active)
 4. optional system message
 5. frozen MEMORY snapshot
 6. frozen USER profile snapshot
 7. skills index
-8. context files (`AGENTS.md`, `SOUL.md`, `.cursorrules`, `.cursor/rules/*.mdc`)
+8. context files (`AGENTS.md`, `.cursorrules`, `.cursor/rules/*.mdc`) — SOUL.md is **not** included here when it was already loaded as the identity in step 1
 9. timestamp / optional session ID
 10. platform hint
 
+When `skip_context_files` is set (e.g., subagent delegation), SOUL.md is not loaded and the hardcoded `DEFAULT_AGENT_IDENTITY` is used instead.
+
 ## API-call-time-only layers
 
 These are intentionally *not* persisted as part of the cached system prompt:
@@ -59,10 +61,11 @@ Local memory and user profile data are injected as frozen snapshots at session s
 `agent/prompt_builder.py` scans and sanitizes:
 
 - `AGENTS.md`
-- `SOUL.md`
 - `.cursorrules`
 - `.cursor/rules/*.mdc`
 
+`SOUL.md` is loaded separately via `load_soul_md()` for the identity slot. When it loads successfully, `build_context_files_prompt(skip_soul=True)` prevents it from appearing twice.
+
 Long files are truncated before injection.
 
 ## Skills index

website/docs/guides/use-soul-with-hermes.md

@@ -6,9 +6,9 @@ description: "How to use SOUL.md to shape Hermes Agent's default voice, what bel
 
 # Use SOUL.md with Hermes
 
-`SOUL.md` is the easiest way to give Hermes a stable, default voice.
+`SOUL.md` is the **primary identity** for your Hermes instance. It's the first thing in the system prompt — it defines who the agent is, how it speaks, and what it avoids.
 
-If you want Hermes to feel like the same assistant every time you talk to it — without repeating instructions in every session — this is the file to use.
+If you want Hermes to feel like the same assistant every time you talk to it — or if you want to replace the Hermes persona entirely with your own — this is the file to use.
 
 ## What SOUL.md is for
 
@@ -65,11 +65,11 @@ Important:
 
 ## How Hermes uses it
 
-When Hermes starts a session, it reads `SOUL.md` from `HERMES_HOME`, scans it for prompt-injection patterns, truncates it if needed, and injects the content directly into the prompt.
+When Hermes starts a session, it reads `SOUL.md` from `HERMES_HOME`, scans it for prompt-injection patterns, truncates it if needed, and uses it as the **agent identity** — slot #1 in the system prompt. This means SOUL.md completely replaces the built-in default identity text.
 
-No wrapper language is added around the file.
+If SOUL.md is missing, empty, or cannot be loaded, Hermes falls back to a built-in default identity.
 
-So the content itself matters. Write the way you want Hermes to think and speak.
+No wrapper language is added around the file. The content itself matters — write the way you want your agent to think and speak.
 
 ## A good first edit
 

website/docs/user-guide/configuration.md

@@ -15,7 +15,7 @@ All settings are stored in the `~/.hermes/` directory for easy access.
 ├── config.yaml     # Settings (model, terminal, TTS, compression, etc.)
 ├── .env            # API keys and secrets
 ├── auth.json       # OAuth provider credentials (Nous Portal, etc.)
-├── SOUL.md         # Optional: global persona (agent embodies this personality)
+├── SOUL.md         # Primary agent identity (slot #1 in system prompt)
 ├── memories/       # Persistent memory (MEMORY.md, USER.md)
 ├── skills/         # Agent-created skills (managed via skill_manage tool)
 ├── cron/           # Scheduled jobs
@@ -1318,15 +1318,15 @@ Hermes uses two different context scopes:
 
 | File | Purpose | Scope |
 |------|---------|-------|
+| `SOUL.md` | **Primary agent identity** — defines who the agent is (slot #1 in the system prompt) | `~/.hermes/SOUL.md` or `$HERMES_HOME/SOUL.md` |
 | `AGENTS.md` | Project-specific instructions, coding conventions | Working directory / project tree |
-| `SOUL.md` | Default persona for this Hermes instance | `~/.hermes/SOUL.md` or `$HERMES_HOME/SOUL.md` |
 | `.cursorrules` | Cursor IDE rules (also detected) | Working directory |
 | `.cursor/rules/*.mdc` | Cursor rule files (also detected) | Working directory |
 
+- **SOUL.md** is the agent's primary identity. It occupies slot #1 in the system prompt, completely replacing the built-in default identity. Edit it to fully customize who the agent is.
+- If SOUL.md is missing, empty, or cannot be loaded, Hermes falls back to a built-in default identity.
 - **AGENTS.md** is hierarchical: if subdirectories also have AGENTS.md, all are combined.
-- **SOUL.md** is now global to the Hermes instance and is loaded only from `HERMES_HOME`.
 - Hermes automatically seeds a default `SOUL.md` if one does not already exist.
-- An empty `SOUL.md` contributes nothing to the system prompt.
 - All loaded context files are capped at 20,000 characters with smart truncation.
 
 See also:

website/docs/user-guide/features/personality.md

@@ -6,12 +6,12 @@ description: "Customize Hermes Agent's personality with a global SOUL.md, built-
 
 # Personality & SOUL.md
 
-Hermes Agent's personality is customizable, but there are two different layers that matter:
+Hermes Agent's personality is fully customizable. `SOUL.md` is the **primary identity** — it's the first thing in the system prompt and defines who the agent is.
 
-- `SOUL.md` — a durable persona file that lives in `HERMES_HOME` and is loaded automatically for that Hermes instance
+- `SOUL.md` — a durable persona file that lives in `HERMES_HOME` and serves as the agent's identity (slot #1 in the system prompt)
 - built-in or custom `/personality` presets — session-level system-prompt overlays
 
-If you want a stable default voice that follows you across sessions, `SOUL.md` is the right tool.
+If you want to change who Hermes is — or replace it with an entirely different agent persona — edit `SOUL.md`.
 
 ## How SOUL.md works now
 
@@ -29,15 +29,16 @@ $HERMES_HOME/SOUL.md
 
 ### Important behavior
 
+- **SOUL.md is the agent's primary identity.** It occupies slot #1 in the system prompt, replacing the hardcoded default identity.
 - Hermes creates a starter `SOUL.md` automatically if one does not exist yet
 - Existing user `SOUL.md` files are never overwritten
 - Hermes loads `SOUL.md` only from `HERMES_HOME`
 - Hermes does not look in the current working directory for `SOUL.md`
-- If `SOUL.md` exists but is empty, Hermes adds nothing from it to the prompt
+- If `SOUL.md` exists but is empty, or cannot be loaded, Hermes falls back to a built-in default identity
 - If `SOUL.md` has content, that content is injected verbatim after security scanning and truncation
-- Hermes does not add wrapper language like "If SOUL.md is present..." around the file anymore
+- SOUL.md is **not** duplicated in the context files section — it appears only once, as the identity
 
-That makes `SOUL.md` a true per-user or per-instance default personality, not a repo-local trick.
+That makes `SOUL.md` a true per-user or per-instance identity, not just an additive layer.
 
 ## Why this design
 
@@ -117,13 +118,13 @@ You optimize for truth, clarity, and usefulness over politeness theater.
 
 ## What Hermes injects into the prompt
 
-If `SOUL.md` contains text, Hermes injects the file's text itself — not a wrapper explanation.
+`SOUL.md` content goes directly into slot #1 of the system prompt — the agent identity position. No wrapper language is added around it.
 
-So the system prompt gets the content directly, after:
+The content goes through:
 - prompt-injection scanning
 - truncation if it is too large
 
-If the file is empty or whitespace-only, nothing from `SOUL.md` is added.
+If the file is empty, whitespace-only, or cannot be read, Hermes falls back to a built-in default identity ("You are Hermes Agent, an intelligent AI assistant created by Nous Research..."). This fallback also applies when `skip_context_files` is set (e.g., in subagent/delegation contexts).
 
 ## Security scanning
 
@@ -242,14 +243,16 @@ That gives you:
 ## How personality interacts with the full prompt
 
 At a high level, the prompt stack includes:
-1. default Hermes identity
+1. **SOUL.md** (agent identity — or built-in fallback if SOUL.md is unavailable)
-2. memory/user context
+2. tool-aware behavior guidance
-3. skills guidance
+3. memory/user context
-4. context files such as `AGENTS.md`, `.cursorrules`, and global `SOUL.md`
+4. skills guidance
-5. platform-specific formatting hints
+5. context files (`AGENTS.md`, `.cursorrules`)
-6. optional system-prompt overlays such as `/personality`
+6. timestamp
+7. platform-specific formatting hints
+8. optional system-prompt overlays such as `/personality`
 
-So `SOUL.md` is important, but it is one layer in a broader system.
+`SOUL.md` is the foundation — everything else builds on top of it.
 
 ## Related docs